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From the * Sección de Genética y
Unidad de Investigación, Hospital "Teresa Herrera,"
Complejo Hospitalario Juan Canalejo, La Coruña, Spain; the
Laboratorio de Genética Molecular y
Radiobiología, Centro Oncológico de Galicia, La Coruña,
Spain; the
Unidad de la Mujer, La
Coruña, Spain; and the
Harvard Medical
School, Boston, Massachusetts.
| Correspondence to: Dr José Luis Fernández, Centro Oncológico de Galicia, Avda de Montserrat s/n, 15009 La Coruña, Spain (e-mail: genetica{at}cog.es). |
| Received for publication July 29, 2002; accepted for publication September 3, 2002. |
| Abstract |
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Key words: Structure, human sperm, decondensation
A number of tests are currently available for the measurement of sperm DNA
fragmentation (De Jonge, 2002).
These include the TUNEL assay (Gorczyca et al,
1993a,b),
the comet assay (Hughes et al,
1996), the chromomycin A3 test
(Manicardi et al, 1995), the
DNA Breakage Detection-Fluorescence In Situ Hybridization (DBD-FISH) test
(Fernández et al, 1998,
2002;
Fernández and Gosálvez,
2002), and the SCSA test (Evenson et al,
1980,
1985,
1991,
1999;
Evenson and Melamed, 1983; Evenson and Jost, 1994). Recent
data indicate that SCSA test values, expressed as COMP
t (currently
designated "DFI" [DNA fragmentation index]), are significantly
correlated with pregnancy rate in vivo and in vitro. In a recent series that
included more than 25 couples undergoing in vitro fertilization and
intracytoplasmic sperm injection (ICSI) cycles, no term pregnancy occurred
when COMP
t values were more than 27% in the semen samples utilized in
these cycles (Larson et al,
2000). All pregnancies occurred when COMP
t values were
less than 30%. Of the 9 patients in whom a biochemical pregnancy occurred when
COMP
t values were greater than 30% (34%-37%), no term pregnancy was
observed, and all pregnancies ended in first trimester abortion
(Larson et al, 2000).
When somatic cells or spermatozoa with nonfragmented DNA are immersed in an agarose matrix and directly exposed to lysing solutions, the resulting deproteinized nuclei show extended halos of DNA dispersion, as monitored by fluorescence microscopy using specific DNA fluorochromes (Cook and Brazell, 1978; Ankem et al, 2002). The halos correspond to relaxed DNA loops attached to the residual nuclear structure. These deproteinized nuclei are called "nucleoids." The presence of DNA breaks promotes the expansion of the halo of the nucleoid and is the basis for the halo test to detect DNA damage (Roti Roti and Wright, 1987; Smith and Sykes, 1992).
In this study, we introduce the Sperm Chromatin Dispersion (SCD) test as a novel test for the assessment of sperm DNA fragmentation. This assay is based on the halo test and on our observation that, when sperm are treated with an acid solution prior to lysis buffer, the DNA dispersion halos that are observed in sperm nuclei with nonfragmented DNA after the removal of nuclear proteins are either minimally present or not produced at all in sperm nuclei with fragmented DNA. These results were confirmed by a subsequent DBD-FISH assay.
| Materials and Methods |
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SCD Test![]()
Aliquots of 0.2 mL of raw semen and of the different ISolate gradient
fractions in mHTF medium were either analyzed directly or frozen in liquid
nitrogen prior to analysis. Samples were thawed at room temperature and
diluted in mHTF medium to obtain sperm concentrations that ranged between 5
and 10 million/mL. The suspensions were mixed with 1% low-melting-point
aqueous agarose (to obtain a 0.7% final agarose concentration) at 37°C.
Aliquots of 50 µL of the mixture were pipetted onto a glass slide precoated
with 0.65% standard agarose dried at 80°C, covered with a coverslip (24 by
60 mm), and left to solidify at 4°C for 4 minutes. As in the halo test or
the comet assay, the agarose matrix allows for work with unfixed sperm on a
slide in a suspensionlike environment. Coverslips were carefully removed, and
slides were immediately immersed horizontally in a tray with freshly prepared
acid denaturation solution (0.08 N HCl) for 7 minutes at 22°C in the dark
to generate restricted single-stranded DNA (ssDNA) motifs from DNA breaks. The
denaturation was then stopped, and proteins were removed by a transfer of the
slides to a tray with neutralizing and lysing solution 1 (0.4 M Tris, 0.8 M
DTT, 1% SDS, and 50 mM EDTA, pH 7.5) for 10 minutes at room temperature, which
was followed by incubation in neutralizing and lysing solution 2 (0.4 M Tris,
2 M NaCl, and 1% SDS, pH 7.5) for 5 minutes at room temperature. Slides were
thoroughly washed in Tris-borate-EDTA buffer (0.09 M Tris-borate and 0.002 M
EDTA, pH 7.5) for 2 minutes, dehydrated in sequential 70%, 90%, and 100%
ethanol baths (2 minutes each), and air dried. Cells were stained with DAPI
(4',6-diamidino-2-phenylindole) (2 µg/mL) (Roche Diagnostics,
Barcelona, Spain) in Vectashield (Vector Laboratories, Burlingame, Calif) for
fluorescence microscopy or with the Diff-Quik reagent (Baxter Healthcare
Corporation Inc, McGaw, Ill) for brightfield microscopy.
DBD-FISH![]()
A human whole genome probe (4.3 ng/µL in 50% formamide/2x standard
saline citrate [SSC], 10% dextran sulfate, and 100 mM calcium phosphate, pH
7.0) (1x SSC is 0.015 M sodium citrate and 0.15 M sodium chloride
[NaCl], pH 7.0), which had been biotin labeled by nick translation, was
denatured and hybridized overnight at room temperature on dried slides
processed for the SCD test; it was then washed twice in 50% formamide/2x
SSC, pH 7.0, for 5 minutes, and twice in 2x SSC, pH 7, for 3 minutes, at
room temperature. The hybridized probe was detected with
streptavidin-indocarbocyamine (Cy3) (1:200) (Sigma Chemical Co, St Louis, Mo),
and cells were counterstained with DAPI (Fernández et al,
1998,
2002;
Fernández and Gosálvez,
2002).
Fluorescence Microscopy and Digital Image Analysis![]()
Slides were viewed under a DMRB epifluorescence microscope (Leica, Wetzlar,
Germany) equipped with a DMRD photoexposer, PL Fluotar 100x or 40x
objectives, and appropriate fluorescence filters for DAPI and Cy3. Images were
acquired using a high-sensitivity charge-coupled device camera (Ultrapix 1600,
AstroCam, Perkin Elmer Optoelectronics, Santa Clara, Calif), which detects
over 16000 gray levels and allows the subtraction of the current dark image
and a correction for nonuniform sample illumination. Groups of 450 digital
images, 2 per cell (DAPI stain and corresponding DBD-FISH signal), were taken
for each experimental point under similar conditions; these were then stored
in the file format of the camera (in files with an.apf extension) and
thereafter converted to files with an.img format. Each experiment was
repeated at least twice. Image analysis was performed using a semiautomatic
routine designed with Visilog 5.1 software (Noesis, Courtaboeuf, France). This
allows for thresholding, background subtraction, and measurement of the
surface area in pixels from both the halo and the whole nucleoid observed
under DAPI staining, as well as observation of mean fluorescence intensity
(MFI; mean gray level) of the DBD-FISH signal. The halo size of each cell was
evaluated by the relative parameter: surface of the halo ÷ surface of
the whole nucleoid (Figure 1).
Since some sperm cells may have different nuclear sizes, this relative
parameter avoids the distortion that would result if absolute sizes were
considered. DNA dispersion patterns were established in 450 sperm cells from
semen samples obtained from patients with normal (n = 5) and abnormal (n = 5)
semen parameters. Each individual spermatozoon was simultaneously scored by
light microscopy and digital image analysis (DIA) by 2 different observers.
Statistical analysis was carried out using the Student's t test and
one- and two-way analyses of variance (P < .05).
|
Brightfield Microscopy![]()
Slides were also stained with the Diff-Quik solutions used for sperm
morphology, and the degree of DNA dispersion was assessed by brightfield
microscopy. A minimum of 300 spermatozoa were evaluated by 2 different
observers.
| Results |
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DNA Dispersion Patterns and Correlation Between DNA Dispersion and
DNA Fragmentation![]()
Four dispersion patterns were clearly observed when scoring SCD
testprocessed sperm nuclei by either fluorescence or brightfield
microscopy: 1) nuclei with large DNA dispersion halos; 2) nuclei with
medium-sized halos; 3) nuclei with very small-sized halos; and 4) nuclei with
no halo (Figure 2a and c). Very
occasionally, it may be difficult to discriminate between spermatozoa with
medium- and large-sized halos. In these cases, if the halo width is similar to
or larger than the minor diameter of the core of the nucleoid, it will be
considered a sperm cell with a large halo. The presence of DNA breaks in
spermatozoa was confirmed by subsequent hybridization with a whole genome
probe using the DBD-FISH assay. As shown in
Figure 2b, sperm with large DNA
dispersion halos (pattern 1) show very faint to undetectable levels of
DBD-FISH labeling in specific nuclear areas. These probably correspond to
chromocenters resulting from the clustering of repetitive satellite DNA
sequences that are very sensitive to the denaturation. Sperm with medium-sized
halos (pattern 2) exhibit a slightly higher DBD-FISH signal
(Figure 2b) than nuclei with
large halos. In contrast, sperm nuclei with very small halos (pattern 3) or no
halo at all (pattern 4) showed very strong DBD-FISH labeling, which
corresponded to those sperm nuclei with extensive DNA fragmentation. A
previous study had already reported this latter result
(Fernández et al,
2000).
It is noteworthy that, in some samples, sperm with non-dispersed nuclei appeared with different levels of disintegration (Figure 2e and f). Another important observation is that spermatids and/or somatic cell nuclei are clearly distinguished from spermatozoa. These cells show a significantly larger diameter than those of sperm nuclei and have either a very low-intensity DBD-FISH signal or an undetectable DBD-FISH signal (Figure 2g and h). However, when these cells are apoptotic, they exhibit very highly dispersed DNA spots around a faint residual nuclear structure and strong DBD-FISH labeling (Fernández et al, 2002).
Digital vs Manual Analysis![]()
Each individual spermatozoon was simultaneously scored manually and by DIA
analysis by 2 different observers. Table
1 shows the Halo Surface-Whole Nucleoid Surface ratio and the
corresponding MFI values in DBD-FISH for all 4 cell patterns from 5 healthy
sperm donors. Differences were statistically significant (P < .05)
among the 4 cell patterns, confirming the inverse correlation between halo
size and DBD-FISH signal. Figure
3 visually represents the DIA analysis in 450 sperm cells, each
sperm cell being characterized by its data pair: 1) the Halo Surface-Whole
Nucleoid Surface ratio under DAPI staining, and 2) the MFI under DBD-FISH.
Furthermore, the cell pattern, as scored manually, is also identified. There
was an excellent correlation between the results obtained manually and those
obtained by DIA analysis. When a sperm nucleus was manually assigned the
pattern of a large halo, there was a 3.7% probability that this cell could
correspond to a medium-sized halo, as determined by DIA analysis. Conversely,
the probability that spermatozoa scored as medium-sized halos corresponded to
a large-sized halo was only 2.2%. The probability that a sperm cell scored as
a medium-sized halo could correspond to a very small-sized halo was also 2.2%.
Conversely, the probability that a sperm cell scored as a very small-sized
halo could correspond to a medium-sized halo was 3.1%. Finally, the
probability that a sperm nucleus scored (by qualitative analysis) as a very
small-sized halo (or as an undetectable halo) that did not have extensively
fragmented DNA was 1.8%, and this error could increase to 3.1% in the
hypothetical case that this population was exclusively composed of cells with
very small halos. The probability of error was less than 3% in interslide
scoring for all different patterns and in interindividual scoring among 3
different subjects. In conclusion, the manual scoring of SCD
testprocessed sperm samples appears to be an accurate method for the
analysis of sperm DNA fragmentation.
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SCD Test Values in Semen Samples From Healthy Sperm Donors and
Infertility Patients![]()
In order to determine DNA fragmentation levels in semen samples obtained
from healthy sperm donors and infertility patients as determined by the SCD
test, semen samples from healthy sperm donors and from patients attending a
clinic for infertility screening were evaluated. As shown in
Table 2, the percentage of
nondispersed nuclei (ie, nuclei with very small halos or none at all) in semen
samples obtained from infertility patients ranged from 10% to 81%. In
addition, 40% of the samples from patients with normal semen parameters and
60% of the samples from patients with abnormal semen parameters had
nondispersed nuclei values above 30%. In contrast, only 10% of the samples
from healthy sperm donors had non-dispersed nuclei values in semen above 30%,
with values ranging from 3.6% to 35% (Table
2). The SCD test values of healthy sperm donors were significantly
different from those of infertility patients (mean ± SD) (16.7 ±
9.9 vs 35.4 ± 18.3, P < .05). No statistically significant
differences were found between samples from infertility patients with normal
or abnormal semen parameters (32.1 ± 20.4 vs 38.7 ± 16.3,
P > .05). It is worth mentioning that semen samples from healthy
sperm donors were used in intrauterine insemination cycles and that, with the
exception of sample 2, which had a nondispersed nuclei value of 35%, all
resulted in a term pregnancy.
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DNA Dispersion in Sperm Subsets Isolated by Gradient
Centrifugation![]()
In a different set of experiments, the SCD test was applied to the
assessment of DNA fragmentation in sperm subsets isolated by density gradient
centrifugation. Previous studies have shown that the level of DNA
fragmentation, as measured by the SCSA test, was highest in the low-density
fractions and lowest in the 90% sperm pellet
(Ollero et al, 2001). In our
study, 300 sperm cells were scored from raw semen and from each of the 3
ISolate gradient fractions by the SCD test and DBD-FISH. The results show that
the level of DNA fragmentation was also highest in the low-density fraction,
F1, and lowest in the 90% pellet, which is in excellent agreement with
previous studies (Figure 2i through
l; Table 3).
|
In order to rule out the production of fragmentation artifacts during the
manipulation of sperm cells during the SCD test procedure, the level of
nondispersed and dispersed nuclei was assessed in raw semen and the
corresponding ISolate fractions of 2 semen samples with normal and abnormal
semen parameters, respectively. The results indicate that the sum of the
percentage of spermatozoa with nondispersed DNA in the different gradient
fractions (
n), as measured by the SCD test,
multiplied by the fractional sperm concentration of each fraction
(Cn) corresponded to the percentage of nondispersed nuclei
found in raw semen (
S) to within 1%
(Table 3). Note that
S = (
F1 x
CF1 +
F2 x CF2 +
P x CP), where
S is the percentage of sperm nuclei with nondispersed
nuclei in raw semen, and
F1 x CF1,
F2 x CF2, and
P x CP are the percentages
of nondispersed nuclei in ISolate fractions F1 and F2 and the 90% pellet
multiplied by their corresponding fractional sperm concentration,
respectively.
| Discussion |
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What are the advantages and disadvantages of the SCD test compared to other existing methodologies? Unlike currently available semiquantitative tests for the determination of sperm DNA fragmentation (eg, the TUNEL assay, the comet assay, and the chromomycin A3 test), the SCD test does not rely on the determination of either color or fluorescence intensity. Rather, the endpoint measured by the SCD test consists of determining the percentage of spermatozoa with nondispersed (very small halos or none at all) or dispersed nuclei, which can be easily and reliably accomplished by the naked eye. As the results of this study indicate, the use of DIA did not significantly improve the accuracy of the test results compared to brightfield microscopy, implying that the scoring of these patterns by brightfield microscopy provides an accurate means for the determination of DNA dispersion and, therefore, DNA fragmentation in spermatozoa.
The current gold standard for the quantitative determination of sperm DNA fragmentation is the SCSA test. This test relies on the measurement by flow cytometry of green and red fluorescence intensity emitted by spermatozoa with double-stranded DNA (dsDNA) and ssDNA, respectively, following acid denaturation and acridine orange staining (Evenson et al, 1999). Spermatozoa with dsDNA reflect spermatozoa with intact DNA, and spermatozoa with ssDNA are indicative of spermatozoa with fragmented DNA. The DNA fragmentation levels obtained in our study in samples from infertile males and healthy donors are consistent with the results reported by Evenson (1999) and Ollero et al (2001). In addition, the DNA fragmentation values obtained in sperm subsets isolated by ISolate gradient centrifugation are also consistent with the results recently reported using the SCSA test (Ollero et al, 2001; Alvarez et al, 2002). These results indicate that the DNA fragmentation values obtained with the SCD test are comparable to those obtained with the SCSA test. Studies are currently under way to correlate the SCD test values with those of the SCSA test and with fertilization and pregnancy outcome.
What are the implications of DNA fragmentation in the outcome of in vivo and in vitro fertilization? In vitro fertilization of metaphase II oocytes with spermatozoa that have damaged DNA could potentially lead to failed fertilization, defective embryo development, implantation failure, or early abortion (Genesca et al, 1992; Parinaud et al, 1993; Twigg et al, 1998; Evenson et al, 1999). One could speculate that those samples with high DNA fragmentation values should produce lower fertilization rates after ICSI than the samples with low DNA fragmentation values. This hypothesis is currently being tested in our laboratory.
In conclusion, the results of this study show that the SCD test is a simple, fast, accurate, and highly reproducible method for the analysis of sperm DNA fragmentation in semen and processed sperm. Moreover, it has a turn-around time of less than 1 hour (scoring included) and reagent costs per sample of about $0.5, allowing the simultaneous processing of several samples per slide. Finally, the SCD test does not require the use of complex instrumentation: it can be carried out with equipment normally available in andrology laboratories (ie, light microscopes), and the test endpoints (nondispersed and dispersed nuclei) can be easily assessed by laboratory technicians. Therefore, the SCD test could potentially be used for the routine screening of sperm DNA fragmentation in the andrology laboratory.
| Acknowledgments |
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| Footnotes |
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