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From the * Centre for Cellular and Molecular
Biology, Hyderabad, India; and the
Institute
of Reproductive Medicine, Kolkata, India.
| Correspondence to: Dr Lalji Singh, Centre for Cellular and Molecular Biology, Uppal Road, Hyderabad 500 007, India. (e-mail: lalji{at}gene.ccmbindia.org). |
| Received for publication January 28, 2002; accepted for publication May 23, 2002. |
| Abstract |
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Key words: X chromosome, azoospermia
| Materials and Methods |
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DNA Isolation![]()
DNA was isolated from the samples using the following protocol.
Erythrocytes were lysed with 15.0 mL of erythrocyte lysis buffer (10 mM Tris
pH 8.0, 320 mM sucrose, 5 mM MgCl2, 1% Triton X-100; Sigma Chemical
Company, St Louis, Mo) for 5 minutes. After complete lysis of erythrocytes,
leukocytes were pelleted by centrifugation at 500 x g for 5
minutes. The leukocyte pellet was dissolved in 8.0 mL of leukocyte lysis
buffer (400 mM Tris, 60 mM EDTA, 150 mM NaCl, and 1% SDS; Sigma) and mixed
thoroughly. To this, 2.0 mL of 5 M sodium perchlorate (E. Merck, Damstadt,
Germany) was added and mixed thoroughly for 2-3 minutes. DNA was precipitated
after extracting once with phenol:chloroform and once with chloroform. DNA was
washed with 70% ethanol and dissolved in TE buffer (10 mM Tris pH 8.0, 1 mM
EDTA).
PCR Assay for CAG Repeat Analysis![]()
CAG repeat motif of exon 1 in the AR gene was amplified using a pair of
primers flanking the CAG repeat motif (Cram
et al, 2000). Primers were synthesized in an ABI 392 Oligo
synthesizer (Perkin Elmer, Foster City, Calif). The forward primer was
synthesized with 5' FAM (carboxy-fluorescein) label (Perkin Elmer) in
order to analyze the PCR product in the automated DNA sequencer (ABI 377). The
forward primer was also synthesized without a fluorescent label for
sequencing. Polymerase chain reaction (PCR) of each sample was performed in a
0.2-mL thin-wall tube using 5.0 ng of DNA, 10 pM of each primer, 200 µM
deoxynucleotide triphosphates, 1x PCR buffer containing 1.5 mM
MgCl2, and 2 units of AmpliTaqGold (Perkin Elmer). Amplification
was carried out in a GeneAmp9600 thermal cycler (Perkin Elmer) at 94°C for
10 minutes, and then 30 cycles at 94°C for 1 minute, 60°C for 1
minute, 72°C for 1 minute, and a final extension at 72°C for 5
minutes.
GeneScan and Genotyping![]()
Samples (PCR products) were prepared by mixing 1.0 µL of PCR products,
1.5 µL of loading dye (formamide:blue dextran; 5:1) and 0.5 µL of
GS-ROX500 (0.5 µL/sample). After denaturation (94°C for 2 minutes),
samples were electrophoresed in 5% Long Ranger (FMC) gel using an ABI 377
automated DNA sequencer (Perkin Elmer). Raw data were analyzed using GeneScan
and Genotyping software programs (Perkin Elmer) to obtain the allele (repeat)
size (Thangaraj et al,
1999).
Automated DNA Sequencing![]()
To confirm the CAG repeat numbers (allele), 2 samples (PCR products
obtained using nonfluorescent primers) from each repeat size were sequenced
after treating them with exonuclease I and shrimp alkaline phosphatase
(Amersham) at 37°C and 80°C (15 minutes each). Sequencing of PCR
products was carried out using 50 ng (2 µL) of PCR product and 4 pM (1
µL) of non-fluorescent primer (forward and reverse separately), 4 µL of
BigDye Terminator ready reaction kit (Perkin Elmer), and 3 µL of
double-distilled water to adjust the volume to 10 µL. Cycle sequencing was
carried out in a GeneAmp9600 thermal cycler (Perkin Elmer) for 30 cycles at
96°C for 10 seconds, 50°C for 5 seconds, and 60°C for 4 minutes.
Extended products were purified by alcohol precipitation followed by washing
with 70% alcohol (Thangaraj et al,
1999). Purified samples were dissolved in 10 µL of 50% Hi-Di
formamide and analyzed in an ABI 3700 automated DNA Analyzer (Perkin
Elmer).
Statistical Analysis![]()
Means, standard deviations, and standard errors were calculated for both
the azoospermic and fertile groups. A paired t test was carried out
to find the difference in CAG repeats between azoospermic and fertile men
(Systat, version 10.0, from SPSS Inc, Chicago, Ill).
| Results |
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| Discussion |
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The CAG repeat and its association with infertility has been debatable, as some studies reported the presence of a longer stretch of CAG repeat in infertile men (Patrizio et al, 2001) and others showed no significant increase in CAG repeats in infertile men (Dadze et al, 2000). Patrizio and Leonard (2001) suggested in their editorial commentary that more data from different ethnic groups with a large number of controls are required to determine the association of expanded CAG repeat in the AR gene in male infertility. For the first time we assessed the association of CAG repeat with male infertility in Indian populations. Our study clearly demonstrates no association between CAG repeat length and infertility in Indian populations as is evident from the paired t test (t = 0.04; P = .967). A recent report by Meytes et al (2002) supports our conclusions. It clearly shows that what is true for one population may not be true for other populations and suggests that it would be detrimental to extrapolate such findings to other populations, particularly for diagnostic purposes.
| Footnotes |
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| References |
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